{ "_id": "6a1f35a7b401979e734286d1", "Package": "massiveGST", "Type": "Package", "Title": "Competitive Gene Sets Test with the Mann-Whitney-Wilcoxon Test", "Version": "1.0.1", "Date": "2022-05-30", "Authors@R": "person(given = \"Stefano Maria\",\nfamily = \"Pagnotta\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"pagnotta@unisannio.it\",\ncomment = c(ORCID = \"0000-0002-8298-9777\"))", "Maintainer": "Stefano Maria Pagnotta ", "Description": "Friendly implementation of the Mann-Whitney-Wilcoxon test\nfor competitive gene set enrichment analysis.", "License": "GPL (>=3)", "URL": ",\n", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake libglpk-dev make libuv1-dev libxml2-dev\nlibssl-dev perl", "Repository": "https://stefanomp.r-universe.dev", "Date/Publication": "2023-03-28 15:59:00 UTC", "RemoteUrl": "https://github.com/stefanomp/massivegst", "RemoteRef": "HEAD", "RemoteSha": "dae27aafa2088f45146e85b75f09c4c710eb14eb", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-15 06:31:41 UTC", "User": "root" }, "Author": "Stefano Maria Pagnotta [aut, cre, cph] (ORCID:\n)", "MD5sum": "742f5daffb6d4c676d546e3264016394", "_user": "stefanomp", "_type": "src", "_file": "massiveGST_1.0.1.tar.gz", "_fileid": "8012e11782e275c9151f7a1de2cb373c124ce400b414f4766cfc1657b9900ce4", "_filesize": 1213680, "_sha256": "8012e11782e275c9151f7a1de2cb373c124ce400b414f4766cfc1657b9900ce4", "_created": "2026-05-15T06:31:41.000Z", "_published": "2026-06-02T19:57:27.747Z", "_distro": "noble", "_jobs": [ { "job": 79159857945, "time": 140, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7011481010" }, { "job": 79159857834, "time": 130, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7011478009" }, { "job": 79159857821, "time": 192, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7011483209" }, { "job": 79159857543, "time": 143, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7011474302" }, { "job": 79159856676, "time": 214, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7011450765" }, { "job": 79159857045, "time": 120, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7368368171" }, { "job": 79159858090, "time": 98, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7011471147" }, { "job": 79159857917, "time": 98, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7011471148" }, { "job": 79159857756, "time": 95, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7011470281" } ], "_buildurl": "https://github.com/r-universe/stefanomp/actions/runs/25903890586", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/stefanomp/massivegst", "_commit": { "id": "dae27aafa2088f45146e85b75f09c4c710eb14eb", "author": "Stefano Maria Pagnotta ", "committer": "GitHub ", "message": "Add files via upload", "time": 1680019140 }, "_maintainer": { "name": "Stefano Maria Pagnotta", "email": "pagnotta@unisannio.it", "orcid": "0000-0002-8298-9777" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "formattable", "version": ">= 0.2.1", "role": "Depends" }, { "package": "msigdbr", "version": ">= 7.4.0", "role": "Depends" }, { "package": "WriteXLS", "version": ">= 6.3.0", "role": "Depends" }, { "package": "igraph", "version": ">= 1.2.6", "role": "Depends" }, { "package": "visNetwork", "version": ">= 2.0.9", "role": "Depends" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "stefanomp", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 2, "_contributors": [ { "user": "stefanomp", "count": 4, "uuid": 18364052 } ], "_userbio": { "uuid": 18364052, "type": "user", "name": "Stefano Maria Pagnotta" }, "_downloads": { "count": 609, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/massiveGST" }, "_devurl": "https://github.com/stefanomp/massivegst", "_searchresults": 25, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/massiveGST.html", "manual.pdf" ], "_homeurl": "https://github.com/stefanomp/massivegst", "_realowner": "stefanomp", "_cranurl": true, "_releases": [ { "version": "1.0", "date": "2022-03-28" }, { "version": "1.0.1", "date": "2022-06-10" }, { "version": "1.2.3", "date": "2023-03-29" }, { "version": "1.2.4", "date": "2025-03-28" } ], "_exports": [ "cut_by_logit2NES", "cut_by_NES", "cut_by_significance", "get_geneProfile", "get_geneSets_from_local_files", "get_geneSets_from_msigdbr", "massiveGST", "save_as_tsv", "save_as_xls", "write_geneSets_to_gmt" ], "_help": [ { "page": "cut_by_logit2NES", "title": "Trim the table of results.", "topics": [ "cut_by_logit2NES" ] }, { "page": "cut_by_NES", "title": "Trim the table of results.", "topics": [ "cut_by_NES" ] }, { "page": "cut_by_significance", "title": "Trim the table of results.", "topics": [ "cut_by_significance" ] }, { "page": "get_geneProfile", "title": "Load a gene-profile from a txt file.", "topics": [ "get_geneProfile" ] }, { "page": "get_geneSets_from_local_files", "title": "Load the gene-sets collection from local gmt files", "topics": [ "get_geneSets_from_local_files" ] }, { "page": "get_geneSets_from_msigdbr", "title": "Get the gene-sets from the msigdbr package.", "topics": [ "get_geneSets_from_msigdbr" ] }, { "page": "massiveGST", "title": "massive Gene-Sets Test with Mann-Whitney-Wilcoxon statistics.", "topics": [ "massiveGST" ] }, { "page": "plot.mGST", "title": "Graphical rendering of the enrichment analysis.", "topics": [ "plot.mGST" ] }, { "page": "pre_ranked_list", "title": "FGFR3-TACC3 fusion positive gene profile", "topics": [ "pre_ranked_list" ] }, { "page": "save_as_tsv", "title": "Save the results in tab-separeted value file", "topics": [ "save_as_tsv" ] }, { "page": "save_as_xls", "title": "Save the results in xls file format", "topics": [ "save_as_xls" ] }, { "page": "summary.mGST", "title": "Generate summary tables", "topics": [ "summary.mGST" ] }, { "page": "write_geneSets_to_gmt", "title": "Save a collection of gene-sets in a .gmt file format.", "topics": [ "write_geneSets_to_gmt" ] } ], "_rundeps": [ "assertthat", "babelgene", "base64enc", "bslib", "cachem", "cli", "cpp11", "curl", "digest", "dplyr", "evaluate", "fastmap", "fontawesome", "formattable", "fs", "generics", "glue", "highr", "htmltools", "htmlwidgets", "igraph", "jquerylib", "jsonlite", "knitr", "lattice", "lifecycle", "magrittr", "Matrix", "memoise", "mime", "msigdbr", "pillar", "pkgconfig", "R6", "rappdirs", "rlang", "rmarkdown", "sass", "tibble", "tidyselect", "tinytex", "utf8", "vctrs", "visNetwork", "withr", "WriteXLS", "xfun", "yaml" ], "_vignettes": [ { "source": "vignette.Rmd", "filename": "vignette.html", "title": "massive GST (version 20220316)", "author": "S.M. Pagnotta - Dept. of Science and Technology, Università degli Studi del Sannio (Benevento, Italy)", "engine": "knitr::rmarkdown", "headings": [ "Installation", "Setup", "getting gene-profile from a file", "getting gene-sets from msigdbr", "Running the analysis with alternative = \"two.sided\"", "The summary method.", "Trimming the table fo results", "Plotting the analysis", "A more intensive analysis: playing with more than 10,000 gene-sets", "Session info" ], "created": "2022-03-28 09:56:52", "modified": "2022-03-28 09:56:52", "commits": 1 } ], "_score": 3.6989700043360187, "_indexed": true, "_nocasepkg": "massivegst", "_universes": [ "stefanomp" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-05-15T06:33:54.000Z", "distro": "noble", "commit": "dae27aafa2088f45146e85b75f09c4c710eb14eb", "fileid": "54461011bcd6e522f8a7e7497523d1ce1a443226806fe2e4c63e2e7624a9ac19", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/stefanomp/actions/runs/25903890586" }, { "r": "4.6.0", "os": "linux", "version": "1.0.1", "date": "2026-05-15T06:33:42.000Z", "distro": "noble", "commit": "dae27aafa2088f45146e85b75f09c4c710eb14eb", "fileid": "8e4a4fb99ab3e6a0015da5722e294c510d752a0d70fd0454657e6ac03a82a834", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/stefanomp/actions/runs/25903890586" }, { "r": "4.5.3", "os": "mac", "version": "1.0.1", "date": "2026-05-15T06:34:11.000Z", "commit": "dae27aafa2088f45146e85b75f09c4c710eb14eb", "fileid": "c8053575a28db46f6d0e3a40ee6ce2df58ef94291240e31b8e22c3c9b41e1d83", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/stefanomp/actions/runs/25903890586" }, { "r": "4.6.0", "os": "mac", "version": "1.0.1", "date": "2026-05-15T06:33:25.000Z", "commit": "dae27aafa2088f45146e85b75f09c4c710eb14eb", "fileid": "5e11bf2fc024685b2c8e01d21fe287f34e571d873f5e1e9b010a9115f8fbf39b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/stefanomp/actions/runs/25903890586" }, { "r": "4.7.0", "os": "win", "version": "1.0.1", "date": "2026-05-15T06:33:00.000Z", "commit": "dae27aafa2088f45146e85b75f09c4c710eb14eb", "fileid": "34fdf7bee6c57a342bd59174b40d9fbbf0be0faef555a6006222bcf58ec478bf", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/stefanomp/actions/runs/25903890586" }, { "r": "4.5.3", "os": "win", "version": "1.0.1", "date": "2026-05-15T06:32:57.000Z", "commit": "dae27aafa2088f45146e85b75f09c4c710eb14eb", "fileid": "5b746bc9bee43897d14c506c5e45538d02539543b648db2e97caaf3d9f74bbaf", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/stefanomp/actions/runs/25903890586" }, { "r": "4.6.0", "os": "win", "version": "1.0.1", "date": "2026-05-15T06:32:53.000Z", "commit": "dae27aafa2088f45146e85b75f09c4c710eb14eb", "fileid": "559d6416a12a5c0aa28b10a974267635f88b384e9cee01d3a279287ff5a7a5a0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/stefanomp/actions/runs/25903890586" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.1", "date": "2026-06-02T19:57:09.000Z", "commit": "dae27aafa2088f45146e85b75f09c4c710eb14eb", "fileid": "32631c2df0fdb34a71ea64a4332451c048bb8fce042d470ae0d001f6691b705a", "status": "success", "buildurl": "https://github.com/r-universe/stefanomp/actions/runs/25903890586" } ] }